Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks -- Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks -- Towards an Integrated Protein-Protein Interaction Network -- The Factor Graph Network Model for Biological Systems -- Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution -- Finding Nov…
Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response -- Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome -- Fishing for Proteins in the Pacific Northwest -- PhyloGibbs: A Gibbs Sampler Incorporating Phylogenetic Information -- Application of Kernel Method to Reveal Subtypes of TF Binding Motifs -- Learning Regulatory Network Mo…
Discrimination and Clustering -- Probability Models and Statistical Methods -- Pattern Recognition and Computational Learning -- Time Series Analysis -- Marketing, Retailing, and Marketing Research -- Finance, Capital Markets, and Risk Management -- Production, Logistics, and Controlling -- Medicine and Health Services.
Data Analysis -- Optimization in Symbolic Data Analysis: Dissimilarities, Class Centers, and Clustering -- An Efficient Branch and Bound Procedure for Restricted Principal Components Analysis -- A Tree Structured Classifier for Symbolic Class Description -- A Diversity Measure for Tree-Based Classifier Ensembles -- Repeated Confidence Intervals in Self-Organizing Studies -- Fuzzy and Crisp Maha…
Sharper Upper and Lower Bounds for an Approximation Scheme for Consensus-Pattern -- On the Longest Common Rigid Subsequence Problem -- Text Indexing with Errors -- A New Compressed Suffix Tree Supporting Fast Search and Its Construction Algorithm Using Optimal Working Space -- Succinct Suffix Arrays Based on Run-Length Encoding -- Linear-Time Construction of Compressed Suffix Arrays Using o(n l…
Conservation of Combinatorial Structures in Evolution Scenarios -- Toward a Phylogenetically Aware Algorithm for Fast DNA Similarity Search -- Multiple Genome Alignment by Clustering Pairwise Matches -- On the Structure of Reconciliations -- The Statistical Significance of Max-Gap Clusters -- Identifying Evolutionarily Conserved Segments Among Multiple Divergent and Rearranged Genomes -- Genome…
Lower Bounds for Maximum Parsimony with Gene Order Data -- Genes Order and Phylogenetic Reconstruction: Application to ?-Proteobacteria -- Maximizing Synteny Blocks to Identify Ancestral Homologs -- An Expectation-Maximization Algorithm for Analysis of Evolution of Exon-Intron Structure of Eukaryotic Genes -- Likely Scenarios of Intron Evolution -- OMA, A Comprehensive, Automated Project for th…
Invited Lectures -- Data Structures I -- Cryptography and Complexity -- Data Structures II -- Cryptography and Distributed Systems -- Graph Algorithms I -- Security Mechanisms -- Graph Algorithms II -- Automata and Formal Languages I -- Signature and Message Authentication -- Algorithmic Game Theory -- Automata and Logic -- Computational Algebra -- Cache-Oblivious Algorithms and Algorithmic Eng…
Matching Points with Circles and Squares -- The Minimum Manhattan Network Problem: A Fast Factor-3 Approximation -- Algorithms for the d-Dimensional Rigidity Matroid of Sparse Graphs -- Sliding Disks in the Plane -- Weighted Ham-Sandwich Cuts -- Towards Faster Linear-Sized Nets for Axis-Aligned Boxes in the Plane -- Farthest-Point Queries with Geometric and Combinatorial Constraints -- Grid Ver…
Invited Talks -- Algorithmic Problems in Ad Hoc Networks -- Five Challenges in Wide-Area Sensor Systems -- Challenges in Programming Sensor Networks -- Regular Papers -- Distributed Proximity Maintenance in Ad Hoc Mobile Networks -- Adaptive Triangular Deployment Algorithm for Unattended Mobile Sensor Networks -- An Adaptive Blind Algorithm for Energy Balanced Data Propagation in Wireless Senso…