Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks -- Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks -- Towards an Integrated Protein-Protein Interaction Network -- The Factor Graph Network Model for Biological Systems -- Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution -- Finding Nov…
Digital Library Models and Architectures -- Requirements Gathering and Modeling of Domain-Specific Digital Libraries with the 5S Framework: An Archaeological Case Study with ETANA -- On the Effective Manipulation of Digital Objects: A Prototype-Based Instantiation Approach -- LibraRing: An Architecture for Distributed Digital Libraries Based on DHTs -- Multimedia and Hypermedia Digital Librarie…
Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response -- Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome -- Fishing for Proteins in the Pacific Northwest -- PhyloGibbs: A Gibbs Sampler Incorporating Phylogenetic Information -- Application of Kernel Method to Reveal Subtypes of TF Binding Motifs -- Learning Regulatory Network Mo…
Classification and Clustering -- Multi-Class Budget Exploratory Trees -- Methods to Compare Nonparametric Classifiers and to Select the Predictors -- Variable Selection in Cell Classification Problems: A Strategy Based on Independent Component Analysis -- Simplifying Classification Trees Through Consensus Methods -- Selecting the Training Set in Classification Problems with Rare Events -- A Cla…
Part One -- Introduction -- Designing annotation schemes: from theory to model -- Designing Annotation schemes: from model to representation -- Community standards -- Creating annotations -- Using annotations -- Part Two: Case Studies -- General Corpora -- Treebanks -- Semantic annotation -- Discourse level annotation -- Speech (transcribed) -- Biomedical annotations.This handbook offers a thor…
Conservation of Combinatorial Structures in Evolution Scenarios -- Toward a Phylogenetically Aware Algorithm for Fast DNA Similarity Search -- Multiple Genome Alignment by Clustering Pairwise Matches -- On the Structure of Reconciliations -- The Statistical Significance of Max-Gap Clusters -- Identifying Evolutionarily Conserved Segments Among Multiple Divergent and Rearranged Genomes -- Genome…
Lower Bounds for Maximum Parsimony with Gene Order Data -- Genes Order and Phylogenetic Reconstruction: Application to ?-Proteobacteria -- Maximizing Synteny Blocks to Identify Ancestral Homologs -- An Expectation-Maximization Algorithm for Analysis of Evolution of Exon-Intron Structure of Eukaryotic Genes -- Likely Scenarios of Intron Evolution -- OMA, A Comprehensive, Automated Project for th…
Innovative Business Models -- Value Process and Business Process in E-Business Modelling -- VA3: Governance Selection in Value Webs -- From an E-Business Revenue Model to Its Software Reference Architecture -- e-Collaboration and e-Services -- Selecting Supply Partners for E-Collaboration in Supply Chains -- E-Collaboration Architecture for Customer-Driven Business Processes in Inter-Organizati…
to Stream Data Management -- Query Execution and Optimization -- Filtering, Punctuation, Windows and Synopses -- XML & Data Streams -- CAPE: A Constraint-Aware Adaptive Stream Processing Engine -- Efficient Support for Time Series Queries in Data Stream Management Systems -- Managing Distributed Geographical Data Streams with the GIDB Portal System -- Streaming Data Dissemination Using Peer-Pee…
1 – General Artificial Intelligence (GAIW 2005) -- Reducing Propositional Theories in Equilibrium Logic to Logic Programs -- Preference Revision Via Declarative Debugging -- Revised Stable Models – A Semantics for Logic Programs -- Operational Semantics for DyLPs -- Case Retrieval Nets for Heuristic Lexicalization in Natural Language Generation -- Partially Parametric SVM -- Adapting Hausdo…