Probability Theory (i): One Random Variable -- Probability Theory (ii): Many Random Variables -- Statistics (i): An Introduction to Statistical Inference -- Stochastic Processes (i): Poisson Processes and Markov Chains -- The Analysis of One DNA Sequence -- The Analysis of Multiple DNA or Protein Sequences -- Stochastic Processes (ii): Random Walks -- Statistics (ii): Classical Estimation Theor…
Biology in a Nutshell -- Words -- Word Distributions and Occurrences -- Physical Mapping of DNA -- Genome Rearrangements -- Sequence Alignment -- Rapid Alignment Methods: FASTA and BLAST -- DNA Sequence Assembly -- Signals in DNA -- Similarity, Distance, and Clustering -- Measuring Expression of Genome Information -- Inferring the Past: Phylogenetic Trees -- Genetic Variation in Populations -- …
Preprocessing data from genomic experiments -- Preprocessing Overview -- Preprocessing High-density Oligonucleotide Arrays -- Quality Assessment of Affymetrix GeneChip Data -- Preprocessing Two-Color Spotted Arrays -- Cell-Based Assays -- SELDI-TOF Mass Spectrometry Protein Data -- Meta-data: biological annotation and visualization -- Meta-data Resources and Tools in Bioconductor -- Querying On…
DNA: The Molecule of Life -- Theoretical Computer Science: A Primer -- Models of Molecular Computation -- Complexity Issues -- Physical Implementations -- Cellular Computing.This book provides a broad overview of the entire field of DNA computation, tracing its history and development. It contains detailed descriptions of all major theoretical models and experimental results to date, which are …