Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks -- Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks -- Towards an Integrated Protein-Protein Interaction Network -- The Factor Graph Network Model for Biological Systems -- Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution -- Finding Nov…
Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response -- Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome -- Fishing for Proteins in the Pacific Northwest -- PhyloGibbs: A Gibbs Sampler Incorporating Phylogenetic Information -- Application of Kernel Method to Reveal Subtypes of TF Binding Motifs -- Learning Regulatory Network Mo…
Heuristic Search for Network Design -- Polyhedral Combinatorics -- Constraint Languages for Combinatorial Optimization -- A Tutorial on Radiation Oncology and Optimization -- Parallel Algorithm Design for Branch and Bound -- Computer-Aided Design for Electrical and Computer engineering -- Nonlinear Programming and Engineering Applications -- Connecting MRP, MRP II and ERP — Supply Chain Produ…
Optimization Problems Related to Internet Congestion Control -- Problems in Data Structures and Algorithms -- Algorithmic Graph Theory and Its Applications -- Decompositions and Forcing Relations in Graphs and Other Combinatorial Structures -- The Local Ratio Technique and Its Application to Scheduling and Resource Allocation Problems -- Domination Analysis of Combinatorial Optimization Algorit…
Discrete Tomography -- Binary Matrices Under the Microscope: A Tomographical Problem -- On the Reconstruction of Crystals Through Discrete Tomography -- Binary Tomography by Iterating Linear Programs from Noisy Projections -- Combinatorics and Computational Models -- Hexagonal Pattern Languages -- A Combinatorial Transparent Surface Modeling from Polarization Images -- Integral Trees: Subtree D…
Conservation of Combinatorial Structures in Evolution Scenarios -- Toward a Phylogenetically Aware Algorithm for Fast DNA Similarity Search -- Multiple Genome Alignment by Clustering Pairwise Matches -- On the Structure of Reconciliations -- The Statistical Significance of Max-Gap Clusters -- Identifying Evolutionarily Conserved Segments Among Multiple Divergent and Rearranged Genomes -- Genome…
Lower Bounds for Maximum Parsimony with Gene Order Data -- Genes Order and Phylogenetic Reconstruction: Application to ?-Proteobacteria -- Maximizing Synteny Blocks to Identify Ancestral Homologs -- An Expectation-Maximization Algorithm for Analysis of Evolution of Exon-Intron Structure of Eukaryotic Genes -- Likely Scenarios of Intron Evolution -- OMA, A Comprehensive, Automated Project for th…
Theory of Language Measure and Supervisory Control -- Signed Real Measure of Regular Languages -- Optimal Supervisory Control of Regular Languages -- Robust Optimal Control of Regular Languages -- Advanced Topics in Supervisory Control -- Engineering and Software Applications of Language Measure and Supervisory Control -- Discrete Event Supervisory Control of a Mobile Robotic System -- Optimal …
Invited Talk I -- Trends and Challenges for Securer Cryptography in Practice -- Stream Ciphers Analysis -- Distinguishing Attacks on T-Functions -- Introducing a New Variant of Fast Algebraic Attacks and Minimizing Their Successive Data Complexity -- Cryptography Based on Combinatorics -- Equivalent Keys in HFE, C*, and Variations -- A New Structural Attack for GPT and Variants -- A Family of F…
Invited Talk -- Abelian Varieties and Cryptography -- Sequences -- Proof of a Conjecture on the Joint Linear Complexity Profile of Multisequences -- Period of Streamcipher Edon80 -- Boolean Function and S-Box -- On the Algebraic Immunity of Symmetric Boolean Functions -- On Highly Nonlinear S-Boxes and Their Inability to Thwart DPA Attacks -- Hash Functions -- How to Construct Universal One-Way…